[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 4,583 items for (author: shi & p)

EMDB-43753:
Yeast U1 snRNP with humanized U1C Zinc-Finger domain
Method: single particle / : Shi SS, Kuang ZL, Zhao R

PDB-8w2o:
Yeast U1 snRNP with humanized U1C Zinc-Finger domain
Method: single particle / : Shi SS, Kuang ZL, Zhao R

EMDB-38215:
Human GPR34 -Gi complex bound to S3E-LysoPS
Method: single particle / : Kawahara R, Shihoya W, Nureki O

EMDB-38217:
Human GPR34 -Gi complex bound to S3E-LysoPS, receptor focused
Method: single particle / : Kawahara R, Shihoya W, Nureki O

PDB-8xbe:
Human GPR34 -Gi complex bound to S3E-LysoPS
Method: single particle / : Kawahara R, Shihoya W, Nureki O

PDB-8xbg:
Human GPR34 -Gi complex bound to S3E-LysoPS, receptor focused
Method: single particle / : Kawahara R, Shihoya W, Nureki O

EMDB-17779:
Structure of human oligosaccharyltransferase OST-A complex bound to NGI-1
Method: single particle / : Ramirez AS, Kowal J, Locher KP

PDB-8pn9:
Structure of human oligosaccharyltransferase OST-A complex bound to NGI-1
Method: single particle / : Ramirez AS, Kowal J, Locher KP

EMDB-41639:
Langya henipavirus fusion protein in postfusion state
Method: single particle / : Wang Z, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-41640:
Langya henipavirus fusion protein in prefusion state
Method: single particle / : Wang Z, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-41641:
Langya henipavirus postfusion F protein in complex with the 4G5 Fab, local refinement of the viral membrane distal region
Method: single particle / : Wang Z, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-41642:
Langya henipavirus postfusion F protein in complex with 4G5 Fab, local refinement of the viral membrane proximal region
Method: single particle / : Wang Z, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-41644:
Langya henipavirus postfusion fusion protein in complex with 4G5 Fab (global refinement)
Method: single particle / : Wang Z, Veesler D

PDB-8tve:
Langya henipavirus fusion protein in postfusion state
Method: single particle / : Wang Z, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-8tvf:
Langya henipavirus fusion protein in prefusion state
Method: single particle / : Wang Z, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

PDB-8tvg:
Langya henipavirus postfusion F protein in complex with the 4G5 Fab, local refinement of the viral membrane distal region
Method: single particle / : Wang Z, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-8tvh:
Langya henipavirus postfusion F protein in complex with 4G5 Fab, local refinement of the viral membrane proximal region
Method: single particle / : Wang Z, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-37963:
Cryo-EM structure of the hamster prion 23-144 fibril at pH 3.7
Method: helical / : Lee CH, Saw JE, Chen E, Wang CH, Chen R

PDB-8wzx:
Cryo-EM structure of the hamster prion 23-144 fibril at pH 3.7
Method: helical / : Lee CH, Saw JE, Chen E, Wang CH, Chen R

EMDB-41636:
Ghanaian virus fusion glycoprotein (GhV F)
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-41643:
Langya Virus G glycoprotein (LayV G) with stabilizing mutations
Method: single particle / : McCallum M, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-43593:
Langya Virus attachment (G) glycoprotein with K85L/L86K mutation
Method: single particle / : Gibson CG, McCallum MM, Veesler DV

PDB-8tvb:
Ghanaian virus fusion glycoprotein (GhV F)
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-8tvi:
Langya Virus G glycoprotein (LayV G) with stabilizing mutations
Method: single particle / : McCallum M, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

PDB-8vwp:
Langya Virus attachment (G) glycoprotein with K85L/L86K mutation
Method: single particle / : Gibson CG, McCallum MM, Veesler DV, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-36594:
Cryo-EM structure of a designed AAV8-based vector
Method: single particle / : Ke X, Luo S, Zheng Q, Jiang H, Liu F, Sun X

PDB-8jre:
Cryo-EM structure of a designed AAV8-based vector
Method: single particle / : Ke X, Luo S, Zheng Q, Jiang H, Liu F, Sun X

EMDB-18214:
Structure of CUL9-RBX1 ubiquitin E3 ligase complex - hexameric assembly
Method: single particle / : Hopf LVM, Horn-Ghetko D, Schulman BA

EMDB-18216:
Structure of CUL9-RBX1 ubiquitin E3 ligase complex in unneddylated and neddylated conformation - focused cullin dimer
Method: single particle / : Hopf LVM, Horn-Ghetko D, Schulman BA

EMDB-18217:
Structure of CUL9-RBX1 ubiquitin E3 ligase complex in unneddylated and neddylated conformation - focused on E2-like density
Method: single particle / : Hopf LVM, Horn-Ghetko D, Schulman BA

EMDB-18218:
Structure of CUL9-RBX1 ubiquitin E3 ligase complex in unneddylated and neddylated conformation - focused dimeric core
Method: single particle / : Hopf LVM, Horn-Ghetko D, Schulman BA

EMDB-18220:
Structure of the hexameric CUL9-RBX1 complex with deletion of CUL9 CPH domain
Method: single particle / : Hopf LVM, Horn-Ghetko D, Schulman BA

EMDB-18221:
Structure of the hexameric CUL9-RBX1 complex with deletion of CUL9 DOC domain
Method: single particle / : Hopf LVM, Horn-Ghetko D, Schulman BA

EMDB-18222:
Structure of the hexameric CUL9-RBX1 complex with deletion of CUL9 ARM9 domain
Method: single particle / : Hopf LVM, Horn-Ghetko D, Schulman BA

EMDB-18223:
Structure of the hexameric CUL9-RBX1 complex with deletion of CUL9 ARIH-RBR element
Method: single particle / : Hopf LVM, Horn-Ghetko D, Schulman BA

EMDB-19179:
Structure of CUL9-RBX1 ubiquitin E3 ligase complex in unneddylated conformation - symmetry expanded unneddylated dimer
Method: single particle / : Hopf LVM, Horn-Ghetko D, Prabu JR, Schulman BA

PDB-8q7e:
Structure of CUL9-RBX1 ubiquitin E3 ligase complex - hexameric assembly
Method: single particle / : Hopf LVM, Horn-Ghetko D, Schulman BA

PDB-8q7h:
Structure of CUL9-RBX1 ubiquitin E3 ligase complex in unneddylated and neddylated conformation - focused cullin dimer
Method: single particle / : Hopf LVM, Horn-Ghetko D, Schulman BA

PDB-8rhz:
Structure of CUL9-RBX1 ubiquitin E3 ligase complex in unneddylated conformation - symmetry expanded unneddylated dimer
Method: single particle / : Hopf LVM, Horn-Ghetko D, Prabu JR, Schulman BA

EMDB-37320:
CryoEM structure of NaDC1 with Citrate
Method: single particle / : Chi X, Chen Y, Li Y, Dai L, Zhang Y, Shen Y, Shi T, Yang H, Wang Z, Yan R

EMDB-37321:
CryoEM structure of NaDC1 in apo state
Method: single particle / : Chi X, Chen Y, Li Y, Zhang Y, Shen Y, Wang Z, Yan R

EMDB-37322:
NaDC1 with inhibitor ACA
Method: single particle / : Chi X, Chen Y, Li Y, Zhang Y, Shen Y, Wang Z, Yan R

EMDB-37323:
NaS1 with sulfate - IN/IN state
Method: single particle / : Chi X, Chen Y, Li Y, Zhang Y, Shen Y, Wang Z, Yan R

EMDB-37329:
NaS1 with sulfate in IN/OUT state
Method: single particle / : Chi X, Chen Y, Li Y, Zhang Y, Shen Y, Wang Z, Yan R

EMDB-37330:
NaS1 in IN/IN state
Method: single particle / : Chi X, Chen Y, Li Y, Zhang Y, Shen Y, Wang Z, Yan R

EMDB-37332:
NaS1 in IN/OUT state
Method: single particle / : Chi X, Chen Y, Li Y, Zhang Y, Shen Y, Wang Z, Yan R

PDB-8w6c:
CryoEM structure of NaDC1 with Citrate
Method: single particle / : Chi X, Chen Y, Li Y, Dai L, Zhang Y, Shen Y, Chen Y, Shi T, Yang H, Wang Z, Yan R

PDB-8w6d:
CryoEM structure of NaDC1 in apo state
Method: single particle / : Chi X, Chen Y, Li Y, Zhang Y, Shen Y, Chen Y, Wang Z, Yan R

PDB-8w6g:
NaDC1 with inhibitor ACA
Method: single particle / : Chi X, Chen Y, Li Y, Zhang Y, Shen Y, Chen Y, Wang Z, Yan R

PDB-8w6h:
NaS1 with sulfate - IN/IN state
Method: single particle / : Chi X, Chen Y, Li Y, Zhang Y, Shen Y, Chen Y, Wang Z, Yan R

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more